genomic_features.filters.GeneRangesFilter

class genomic_features.filters.GeneRangesFilter(value, type='any')

Filter features within a genomic range

Parameters:

• value (str) – Genomic range in the format “seq_name:start-end”

• type (str) – String indicating how overlaps are to be filters. Options are ‘any’ and ‘within’. Default is ‘any’

Methods table

columns()	Columns required by this filter.
convert()	Convert genomic-features filter expression to ibis deferred expression.

Methods

GeneRangesFilter.columns()

Columns required by this filter.

Return type:

set[str]

GeneRangesFilter.convert()

Convert genomic-features filter expression to ibis deferred expression.