genomic_features.filters.CanonicalTxFilter

class genomic_features.filters.CanonicalTxFilter

Filter for canonical transcripts.

Usage

>>> ensdb.transcripts(filter=gf.filters.CanonicalTxFilter())
>>> ensdb.exons(
...     cols=["tx_id", "exon_id", "seq_name", "exon_seq_start", "exon_seq_end"],
...     filter=gf.filters.CanonicalTxFilter(),
... )

Methods table

columns()	Columns required by this filter.
convert()	Convert genomic-features filter expression to ibis deferred expression.

Methods

CanonicalTxFilter.columns()

Columns required by this filter.

Return type:

set[str]

CanonicalTxFilter.convert()

Convert genomic-features filter expression to ibis deferred expression.